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HUMAN OESTROGEN RECEPTOR BETA LIGAND-BINDING DOMAIN IN COMPLEX WITH PARTIAL AGONIST GENISTEIN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ERE PDB ENTRY 1ERE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.1 6-9% (W/V) PEG 6000, 1.6-2.1M NACL, 0.1M TRIS-HCL, PH 8.1
Crystal Properties Matthews coefficient Solvent content 2.44 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.12 α = 90 b = 63.12 β = 90 c = 250.23 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 1998-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 60 99.7 0.049 15 8 28523 -3 32.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 100 0.433 4 8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ERE 1.8 55 28460 1441 99.7 0.215 0.2157 0.252 0.2477 RANDOM 41.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.115 -1.138 3.116 -3.827
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 23.7 p_staggered_tor 16.1 p_scangle_it 3.745 p_mcangle_it 2.847 p_planar_tor 2.6 p_scbond_it 2.359 p_mcbond_it 1.851 p_multtor_nbd 0.361 p_singtor_nbd 0.181 p_chiral_restr 0.137
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 23.7 p_staggered_tor 16.1 p_scangle_it 3.745 p_mcangle_it 2.847 p_planar_tor 2.6 p_scbond_it 2.359 p_mcbond_it 1.851 p_multtor_nbd 0.361 p_singtor_nbd 0.181 p_chiral_restr 0.137 p_xyhbond_nbd 0.116 p_planar_d 0.041 p_angle_d 0.03 p_bond_d 0.013 p_plane_restr 0.012 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1781 Nucleic Acid Atoms Solvent Atoms 139 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing