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Crystal structure of Staphyloccocus aureus in complex with an aminoketone inhibitor 54135.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 5.5 294 PEG 3350, Bis-tris, ammonium acetate, pH 5.5, microbatch, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.32 47.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.993 α = 90 b = 76.843 β = 104.19 c = 41.935 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 IMAGE PLATE MARRESEARCH 2002-11-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE OTHER 1.57
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.67 20 99 28 3.2 29574 29278 3 14
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.67 1.77 96.7 8.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.67 20 29278 27514 1469 99 0.1594 0.15945 0.15808 0.1688 0.18525 0.1918 RANDOM 10.793
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.46 -0.17 0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 14.04 r_dihedral_angle_1_deg 3.908 r_scangle_it 2.777 r_angle_refined_deg 2.083 r_scbond_it 1.627 r_mcangle_it 0.937 r_angle_other_deg 0.641 r_mcbond_it 0.502 r_nbd_refined 0.242 r_symmetry_hbond_refined 0.197
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 14.04 r_dihedral_angle_1_deg 3.908 r_scangle_it 2.777 r_angle_refined_deg 2.083 r_scbond_it 1.627 r_mcangle_it 0.937 r_angle_other_deg 0.641 r_mcbond_it 0.502 r_nbd_refined 0.242 r_symmetry_hbond_refined 0.197 r_nbd_other 0.189 r_xyhbond_nbd_refined 0.175 r_symmetry_vdw_refined 0.157 r_symmetry_vdw_other 0.155 r_chiral_restr 0.067 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1904 Nucleic Acid Atoms Solvent Atoms 391 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing