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HU mutant V42I from Thermotoga maritima
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1B8Z PDB ENTRY 1B8Z
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.3 293 100mM Na-acetate, pH 4.0-4.5, 80-90% saturated ammonium sulphate, pH 4.3, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.96 37.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.447 α = 90 b = 45.447 β = 90 c = 76.204 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm Bent mirror 2001-08-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 1.0727 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 99.9 0.038 16.9 7.5 59041 7873 -3 28.105
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 100 0.481 3.9 7.8 376
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1B8Z 1.8 15.87 7832 7472 360 100 0.21922 0.21922 0.21615 0.2288 0.2859 0.2352 RANDOM 20.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.16 1.16 -2.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.953 r_scangle_it 5.686 r_scbond_it 3.198 r_dihedral_angle_1_deg 2.676 r_mcangle_it 1.726 r_angle_refined_deg 1.355 r_mcbond_it 0.938 r_angle_other_deg 0.882 r_symmetry_vdw_refined 0.253 r_nbd_refined 0.233
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.953 r_scangle_it 5.686 r_scbond_it 3.198 r_dihedral_angle_1_deg 2.676 r_mcangle_it 1.726 r_angle_refined_deg 1.355 r_mcbond_it 0.938 r_angle_other_deg 0.882 r_symmetry_vdw_refined 0.253 r_nbd_refined 0.233 r_nbd_other 0.212 r_symmetry_vdw_other 0.165 r_xyhbond_nbd_refined 0.104 r_symmetry_hbond_refined 0.101 r_chiral_restr 0.075 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_gen_planes_other 0.005 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 517 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement