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Crystal structure of phenazine biosynthesis protein PhzF family (Enterococcus faecalis)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 290 100 mM HEPES-Na, pH7.5, 27% PEG 3350, 200 mM MgCl2, VAPOR DIFFUSION, SITTING DROP, temperature 290K, pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.38 47.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.8 α = 90 b = 85.74 β = 90 c = 105.4 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV MIRRORS 2003-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 99.1 0.073 0.07 16.2 18 25009 26
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 93.9 0.176 0.181 3.2 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2.3 19.92 1 25009 24840 739 98.9 0.229 0.229 0.23 0.273 0.2729 RANDOM 40.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -8.11 12.99 -4.87
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 25.8 c_scangle_it 5.79 c_scbond_it 4.23 c_mcangle_it 3.77 c_mcbond_it 2.55 c_angle_deg 1.5 c_improper_angle_d 1.35 c_bond_d 0.011 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 25.8 c_scangle_it 5.79 c_scbond_it 4.23 c_mcangle_it 3.77 c_mcbond_it 2.55 c_angle_deg 1.5 c_improper_angle_d 1.35 c_bond_d 0.011 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4128 Nucleic Acid Atoms Solvent Atoms 348 Heterogen Atoms
Software Software Software Name Purpose SCALEPACK data scaling SOLVE phasing CNS refinement