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Crystallographic snapshots of Aspergillus fumigatus phytase revealing its enzymatic dynamics
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 300 PEG 4000, magnesium chloride hexahydrate, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.06 40.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.714 α = 90 b = 99.484 β = 90 c = 100.751 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 mirrors 2003-10-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE A1 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 30 93.5 48970 45787 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.68 80.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.65 30 2 48970 45787 2708 93.5 0.17765 0.1748 0.1984 0.23061 RANDOM 25.131
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.24 2.72 -1.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.206 r_scangle_it 5.376 r_scbond_it 3.837 r_mcangle_it 2.368 r_angle_refined_deg 1.571 r_mcbond_it 1.527 r_symmetry_vdw_refined 0.4 r_nbd_refined 0.228 r_symmetry_hbond_refined 0.216 r_xyhbond_nbd_refined 0.148
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.206 r_scangle_it 5.376 r_scbond_it 3.837 r_mcangle_it 2.368 r_angle_refined_deg 1.571 r_mcbond_it 1.527 r_symmetry_vdw_refined 0.4 r_nbd_refined 0.228 r_symmetry_hbond_refined 0.216 r_xyhbond_nbd_refined 0.148 r_chiral_restr 0.11 r_bond_refined_d 0.015 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3374 Nucleic Acid Atoms Solvent Atoms 397 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing