☰ Navigation Tabs
T76W mutant of RNase Sa from Streptomyces aureofaciens
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RGG PDB entry 1rgg
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 293 ammonium sulfate, disodium phosphate, monosodium phosphate, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.8 32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.872 α = 90 b = 40.462 β = 90 c = 56.638 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2003-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 1.096 EMBL/DESY, HAMBURG X31
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 29 95.3 0.03 53.3 6.4 29254 10
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.1 1.11 90.2 0.18 8.7 5.2 705
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1rgg 1.1 29 29254 1560 95.34 0.1303 0.12839 0.1304 0.16698 0.167 RANDOM 8.383
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.77 r_sphericity_free 2.855 r_scangle_it 2.543 r_sphericity_bonded 2.271 r_scbond_it 1.79 r_angle_other_deg 1.73 r_mcangle_it 1.56 r_angle_refined_deg 1.428 r_mcbond_it 1.003 r_rigid_bond_restr 0.925
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.77 r_sphericity_free 2.855 r_scangle_it 2.543 r_sphericity_bonded 2.271 r_scbond_it 1.79 r_angle_other_deg 1.73 r_mcangle_it 1.56 r_angle_refined_deg 1.428 r_mcbond_it 1.003 r_rigid_bond_restr 0.925 r_symmetry_vdw_other 0.298 r_nbd_other 0.246 r_nbd_refined 0.208 r_symmetry_vdw_refined 0.185 r_symmetry_hbond_refined 0.146 r_xyhbond_nbd_refined 0.142 r_nbtor_other 0.086 r_chiral_restr 0.084 r_gen_planes_other 0.014 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 827 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing