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Structure of the (SR)Ca2+-ATPase Ca2-E1-ADP:AlF4- form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 292 PEG 6000, tert-butanol, sodium acetate, potassium chloride, magnesium chloride, glycerol, MOPS, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.9 68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 162.477 α = 90 b = 75.617 β = 108.82 c = 151.651 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-02-24 M SINGLE WAVELENGTH 2 1 100 CCD MARRESEARCH 2004-02-24 3 1 100 IMAGE PLATE MARRESEARCH 2004-03-27
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.952 BESSY 14.1 2 SYNCHROTRON BESSY BEAMLINE 14.1 0.952 BESSY 14.1 3 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.8116 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 50 99.9 0.11 0.11 23.9 7.3 38895 38895 -3 80
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 2.97 99.8 0.8 0.8 2.1 5.7 2554
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 50 38895 37727 1153 99.88 0.24746 0.24746 0.24602 0.2329 0.29348 0.2831 RANDOM 74.729
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.34 -3.83 6.38 -7.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.537 r_dihedral_angle_3_deg 19.904 r_dihedral_angle_4_deg 19.061 r_dihedral_angle_1_deg 7.662 r_scangle_it 2.334 r_angle_refined_deg 1.571 r_scbond_it 1.353 r_mcangle_it 1.139 r_angle_other_deg 0.878 r_mcbond_it 0.607
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.537 r_dihedral_angle_3_deg 19.904 r_dihedral_angle_4_deg 19.061 r_dihedral_angle_1_deg 7.662 r_scangle_it 2.334 r_angle_refined_deg 1.571 r_scbond_it 1.353 r_mcangle_it 1.139 r_angle_other_deg 0.878 r_mcbond_it 0.607 r_nbd_refined 0.251 r_symmetry_vdw_other 0.23 r_nbd_other 0.203 r_xyhbond_nbd_refined 0.195 r_symmetry_hbond_refined 0.175 r_symmetry_vdw_refined 0.157 r_metal_ion_refined 0.156 r_nbtor_other 0.093 r_chiral_restr 0.085 r_mcbond_other 0.074 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7671 Nucleic Acid Atoms Solvent Atoms 43 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing