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Structural genomics of Caenorhabditis elegans: CAP-GLY domain of F53F4.3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.82 56.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.156 α = 90 b = 64.156 β = 90 c = 101.946 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.77 50 100 12627 0.001
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.77 1.88 91.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAS THROUGHOUT 1.77 48.8 11598 627 96.34 0.21319 0.21081 0.211 0.2587 0.2569 RANDOM 27.051
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 -0.11 -0.21 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.535 r_scangle_it 3.105 r_scbond_it 1.813 r_mcangle_it 1.255 r_angle_refined_deg 1.012 r_mcbond_it 0.654 r_nbd_refined 0.169 r_symmetry_hbond_refined 0.152 r_symmetry_vdw_refined 0.134 r_xyhbond_nbd_refined 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.535 r_scangle_it 3.105 r_scbond_it 1.813 r_mcangle_it 1.255 r_angle_refined_deg 1.012 r_mcbond_it 0.654 r_nbd_refined 0.169 r_symmetry_hbond_refined 0.152 r_symmetry_vdw_refined 0.134 r_xyhbond_nbd_refined 0.1 r_chiral_restr 0.075 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 740 Nucleic Acid Atoms Solvent Atoms 81 Heterogen Atoms 5
Software Software Software Name Purpose HKL-2000 data collection HKL-2000 data reduction ISAS2001 model building REFMAC refinement HKL-2000 data scaling ISAS phasing