1TR4

Solution structure of human oncogenic protein gankyrin


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1TROSY-type HNCA, HN(CO)CA, HNCACB, CBCA(CO)NH, HNCO~0.4 mM gankyrin U-15N,13C,70% 2H5mM HEPES, 1 uM EDTA, 1mM DTT< 10 mM salt7.4ambient300
23D_13C-separated_NOESY~0.4 mM gankyrin U-15N, 13C5mM HEPES, 1 uM EDTA, 1mM DTT< 10 mM salt7.4ambient300
33D_15N-separated_NOESY~0.4 mM gankyrin U-15N5mM HEPES, 1 uM EDTA, 1mM DTT< 10 mM salt7.4ambient300
4residual dipolar coupling~0.4 mM gankyrin U-15N5mM HEPES, 1 uM EDTA, 1mM DTT< 10 mM salt7.4ambient300
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX800
2BrukerDMX600
NMR Refinement
MethodDetailsSoftware
simulated annealingXwinNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations,structures with the lowest energy
Conformers Calculated Total Number80
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Additional NMR Experimental Information
DetailsBackbone amide residual dipolar coupling experiment was performed in the presence of filamentous Pf1 phage
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR3.1Bruker
2processingXwinNMR3.1Bruker
3processingNMRPipe1.0Delaglio
4data analysisNMRView4.0Johnson
5structure solutionCNS1.0Brunger
6refinementCNS1.0Brunger