1TR4
Solution structure of human oncogenic protein gankyrin
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | TROSY-type HNCA, HN(CO)CA, HNCACB, CBCA(CO)NH, HNCO | ~0.4 mM gankyrin U-15N,13C,70% 2H | 5mM HEPES, 1 uM EDTA, 1mM DTT | < 10 mM salt | 7.4 | ambient | 300 | |
2 | 3D_13C-separated_NOESY | ~0.4 mM gankyrin U-15N, 13C | 5mM HEPES, 1 uM EDTA, 1mM DTT | < 10 mM salt | 7.4 | ambient | 300 | |
3 | 3D_15N-separated_NOESY | ~0.4 mM gankyrin U-15N | 5mM HEPES, 1 uM EDTA, 1mM DTT | < 10 mM salt | 7.4 | ambient | 300 | |
4 | residual dipolar coupling | ~0.4 mM gankyrin U-15N | 5mM HEPES, 1 uM EDTA, 1mM DTT | < 10 mM salt | 7.4 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 800 |
2 | Bruker | DMX | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations,structures with the lowest energy |
Conformers Calculated Total Number | 80 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
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Details | Backbone amide residual dipolar coupling experiment was performed in the presence of filamentous Pf1 phage |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.1 | Bruker |
2 | processing | XwinNMR | 3.1 | Bruker |
3 | processing | NMRPipe | 1.0 | Delaglio |
4 | data analysis | NMRView | 4.0 | Johnson |
5 | structure solution | CNS | 1.0 | Brunger |
6 | refinement | CNS | 1.0 | Brunger |