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The Structure of a Class II ubiquitin-conjugating enzyme, Ubc1.
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_13C-separated_NOESY 0.48mM U-15N,13C Ubc1; 25 mM Tris; 1 mM EDTA, 1mM DITHIOTHREITOL, 150 mM NaCl 90 % H2O, 10% H2O 150 mM NaCl 7.5 Ambient 308 2 3D_15N-separated_NOESY 0.48 mM U-15N Ubc1; 25 mM Tris; 1 mM, 1 mM EDTA, 1mM DTT, 150 mM NaCl 90% H2O/10% D2O 150 mM NaCl 7.5 Ambient 308
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 800 2 Varian INOVA 600 3 Varian UNITY 500
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 21 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS 1.1 A.T.Brunger, P.D.Adams, G.M.Clore, W.L.Delano, P.Gros, R.W.Grosse-Kunstleve, J.-S.Jiang, J.Kuszewski, M.Nilges, N.S.Pannu, R.J.Read, L.M.Rice, T.Simonson, G.L.Warren 2 processing NMRPipe 2.1 F. Delaglio, S. Grzesiek, G. W. Vuister, G. Zhu, J. Pfeifer and A. Bax 3 data analysis Pipp/Stapp 4.3.3 Garrett, D.S., Powers, R., Gronenborn, A.M. & Clore, G.M 4 collection VNMR 6.1C Varian Inc