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Crystal structure of Mycobacterium tuberculosis NAD kinase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 298 PEG 4000, MES buffer, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 6.00
Crystal Properties Matthews coefficient Solvent content 2.46 49.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.757 α = 90 b = 145.655 β = 90 c = 68.713 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 98.3 0.1 6.7 29110 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 50 4 28131 941 0.228 0.226 0.289 RANDOM 35.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.76 0.62 -1.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.952 r_scangle_it 4.508 r_scbond_it 2.831 r_angle_refined_deg 1.901 r_mcangle_it 1.76 r_mcbond_it 0.964 r_symmetry_vdw_refined 0.261 r_nbd_refined 0.249 r_xyhbond_nbd_refined 0.217 r_symmetry_hbond_refined 0.176
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.952 r_scangle_it 4.508 r_scbond_it 2.831 r_angle_refined_deg 1.901 r_mcangle_it 1.76 r_mcbond_it 0.964 r_symmetry_vdw_refined 0.261 r_nbd_refined 0.249 r_xyhbond_nbd_refined 0.217 r_symmetry_hbond_refined 0.176 r_chiral_restr 0.146 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4088 Nucleic Acid Atoms Solvent Atoms 276 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling