☰ Navigation Tabs
Structure of E. coli uridine phosphorylase complexed to 5-(m-(benzyloxy)benzyl)barbituric acid (BBBA)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 298 PEG 4000, MES, GLYCEROL, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.51 50.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.677 α = 90 b = 127.124 β = 90 c = 143.355 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2003-07-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 8-BM 0.9790 APS 8-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 49.39 94.9 118727 118727
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 71.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 49.39 107629 107629 8161 98.34 0.20121 0.20121 0.19968 0.1989 0.22148 0.2196 RANDOM 16.53
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 0.43 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.423 r_angle_refined_deg 0.897 r_scangle_it 0.675 r_scbond_it 0.378 r_mcangle_it 0.21 r_nbd_refined 0.152 r_symmetry_vdw_refined 0.122 r_mcbond_it 0.108 r_xyhbond_nbd_refined 0.071 r_chiral_restr 0.059
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.423 r_angle_refined_deg 0.897 r_scangle_it 0.675 r_scbond_it 0.378 r_mcangle_it 0.21 r_nbd_refined 0.152 r_symmetry_vdw_refined 0.122 r_mcbond_it 0.108 r_xyhbond_nbd_refined 0.071 r_chiral_restr 0.059 r_symmetry_hbond_refined 0.054 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11156 Nucleic Acid Atoms Solvent Atoms 692 Heterogen Atoms 177
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling CNS refinement MOSFLM data reduction CNS phasing