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Structure and function of phenazine-biosynthesis protein PhzF from Pseudomonas fluorescens 2-79
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 292 0.1M Na-Citrate, 0.2M Ammonium Sulphate, 10% (w/v) PEG 3350, pH 5.6, temperature 292K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.19 43.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.26 α = 90 b = 56.26 β = 90 c = 156.4 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 98.2 0.075 27.4 20.6 31965 31965 22
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.8 91.1 0.268 9.8 15.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 19.21 30304 1633 98.41 0.1309 0.12967 0.1316 0.15338 0.1539 RANDOM 13.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 0.1 0.21 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.106 r_scangle_it 5.044 r_scbond_it 3.16 r_mcangle_it 1.765 r_angle_refined_deg 1.562 r_mcbond_it 0.963 r_angle_other_deg 0.918 r_symmetry_vdw_other 0.355 r_nbd_other 0.257 r_symmetry_hbond_refined 0.227
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.106 r_scangle_it 5.044 r_scbond_it 3.16 r_mcangle_it 1.765 r_angle_refined_deg 1.562 r_mcbond_it 0.963 r_angle_other_deg 0.918 r_symmetry_vdw_other 0.355 r_nbd_other 0.257 r_symmetry_hbond_refined 0.227 r_symmetry_vdw_refined 0.217 r_xyhbond_nbd_refined 0.204 r_nbd_refined 0.2 r_chiral_restr 0.106 r_nbtor_other 0.082 r_bond_refined_d 0.025 r_gen_planes_other 0.019 r_gen_planes_refined 0.013 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2119 Nucleic Acid Atoms Solvent Atoms 331 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHELXD phasing