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Vinculin head (0-258) in complex with the talin vinculin binding site 2 (849-879)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other unpublished data
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 PEG 8000, Tris-HCl, magnesium chloride, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.5 50.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.122 α = 90 b = 69.154 β = 90 c = 96.162 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Toroidal Zerodur mirror, radii of 4.9km and 79mm 2004-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.38 30 99.68 0.116 10.97 14457 14457
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.38 2.442 99.23
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT unpublished data 2.38 30 14457 13740 717 99.68 0.24574 0.24574 0.24196 0.2416 0.3223 0.3127 RANDOM 48.795
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.28 7.68 -5.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.458 r_dihedral_angle_3_deg 23.752 r_dihedral_angle_4_deg 21.315 r_dihedral_angle_1_deg 8.223 r_scangle_it 4.25 r_scbond_it 2.606 r_angle_refined_deg 2.115 r_mcangle_it 1.772 r_mcbond_it 1.045 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.458 r_dihedral_angle_3_deg 23.752 r_dihedral_angle_4_deg 21.315 r_dihedral_angle_1_deg 8.223 r_scangle_it 4.25 r_scbond_it 2.606 r_angle_refined_deg 2.115 r_mcangle_it 1.772 r_mcbond_it 1.045 r_nbtor_refined 0.311 r_nbd_refined 0.265 r_symmetry_vdw_refined 0.232 r_xyhbond_nbd_refined 0.201 r_symmetry_hbond_refined 0.157 r_chiral_restr 0.138 r_bond_refined_d 0.02 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2115 Nucleic Acid Atoms Solvent Atoms 57 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing