☰ Navigation Tabs
Crystal structure of n-aequorin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 293 Ammonium sulfate, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.96 36.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.223 α = 72.35 b = 57.038 β = 79.97 c = 57.768 γ = 67.89
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD OXFORD PX210 mirrors M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 43.5 93.4 0.044 14.5 1.8 50773 50773 13.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.66 79.9 0.131 1.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 33.3 45000 2362 93.28 0.1657 0.16401 0.1677 0.19854 0.2006 RANDOM 12.765
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.03 0.02 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.036 r_scangle_it 3.983 r_scbond_it 2.471 r_angle_refined_deg 1.542 r_mcangle_it 1.425 r_angle_other_deg 0.936 r_mcbond_it 0.764 r_symmetry_vdw_refined 0.287 r_symmetry_vdw_other 0.266 r_nbd_other 0.247
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.036 r_scangle_it 3.983 r_scbond_it 2.471 r_angle_refined_deg 1.542 r_mcangle_it 1.425 r_angle_other_deg 0.936 r_mcbond_it 0.764 r_symmetry_vdw_refined 0.287 r_symmetry_vdw_other 0.266 r_nbd_other 0.247 r_nbd_refined 0.227 r_symmetry_hbond_refined 0.224 r_xyhbond_nbd_refined 0.176 r_chiral_restr 0.094 r_nbtor_other 0.085 r_bond_refined_d 0.014 r_gen_planes_other 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3048 Nucleic Acid Atoms Solvent Atoms 496 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling MOLREP phasing