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Human Hsp90-alpha with 8-Benzo[1,3]dioxol-,5-ylmethyl-9-butyl-9H-purin-6-ylamine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YER PDB ENTRY 1YER
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 25% PEG MME 2000, 0.1M NA CACODYLATE, PH6.5, 0.2M MGCL2., pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.7 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.651 α = 90 b = 90.806 β = 90 c = 98.723 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV OSMIC BLUE MIRRORS 2002-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 98.4 0.03 10.2 5.1 20657
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 89.7 0.106 3.4 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1YER 2 67.42 19286 1036 98.2 0.185 0.183 0.1783 0.218 0.2116 RANDOM 28.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.87 0.61 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.24 r_scangle_it 4.031 r_scbond_it 2.303 r_mcangle_it 1.57 r_angle_refined_deg 1.387 r_mcbond_it 0.826 r_nbd_refined 0.209 r_symmetry_hbond_refined 0.2 r_symmetry_vdw_refined 0.189 r_xyhbond_nbd_refined 0.141
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.24 r_scangle_it 4.031 r_scbond_it 2.303 r_mcangle_it 1.57 r_angle_refined_deg 1.387 r_mcbond_it 0.826 r_nbd_refined 0.209 r_symmetry_hbond_refined 0.2 r_symmetry_vdw_refined 0.189 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.092 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1634 Nucleic Acid Atoms Solvent Atoms 274 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling MOLREP phasing