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MabA from Mycobacterium tuberculosis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.6 PIPES PH 6.6 CSCL 400 MM, PEG 3000 12%, NADP 100 MM
Crystal Properties Matthews coefficient Solvent content 1.8 32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.539 α = 90 b = 117.111 β = 122.62 c = 51.869 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 50 93.1 0.052 17 2.5 28001
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 1.96 76.2 0.15 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.91 50 28001 1462 92.9 0.187 0.185 0.1943 0.227 0.2389 RANDOM 21.06
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.84 2.79 -2.38 3.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.697 r_angle_refined_deg 1.182 r_angle_other_deg 0.783 r_metal_ion_refined 0.638 r_symmetry_vdw_refined 0.487 r_symmetry_vdw_other 0.274 r_nbd_other 0.233 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.153 r_symmetry_hbond_refined 0.125
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.697 r_angle_refined_deg 1.182 r_angle_other_deg 0.783 r_metal_ion_refined 0.638 r_symmetry_vdw_refined 0.487 r_symmetry_vdw_other 0.274 r_nbd_other 0.233 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.153 r_symmetry_hbond_refined 0.125 r_nbtor_other 0.08 r_chiral_restr 0.071 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3348 Nucleic Acid Atoms Solvent Atoms 271 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling