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Crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Crystallization Crystal Properties Matthews coefficient Solvent content 2.14 42.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.866 α = 90 b = 78.783 β = 90 c = 138.385 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARRESEARCH MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 32-ID 0.9795, 0.9795, 0.9641, 1.5418 APS 32-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 22.65 96.8 0.058 17.9 6.6 40899 40899
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 96.8 0.455 4.6 6.1
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION Se-Met MAD phasing 1.8 22.65 40898 2071 0.224 0.2088 0.253 0.2357 30.219
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.931 0.386 -1.316
RMS Deviations Key Refinement Restraint Deviation p_scangle_it 4.985 p_scbond_it 3.402 p_mcangle_it 3.318 p_planar_tor 2.878 p_angle_d 2.398 p_mcbond_it 2.151 p_chiral_restr 0.174 p_bond_d 0.028 p_plane_restr 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3176 Nucleic Acid Atoms Solvent Atoms 197 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling TRUNCATE data reduction REFMAC refinement CCP4 data scaling TRUNCATE data scaling