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Gene Product of At1g76680 from Arabidopsis thaliana
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 277 Methyl ether, Polyethylene glycol 5k,Calcium Chloride, MES,
pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K, pH 6.0
Crystal Properties Matthews coefficient Solvent content 1.86 33.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.688 α = 90 b = 88.066 β = 90 c = 149.334 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARRESEARCH Bent cylindrical Si-mirror (Rh coating) 2003-10-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-D 0.96400 APS 14-BM-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 98.2 0.07 20816
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 92 0.875
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.003 43.85 19708 1072 98.1 0.21 0.2062 0.2059 0.293 0.2901 RANDOM 31.114
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.713 1.89 -1.176
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.111 r_scangle_it 4.218 r_scbond_it 3.045 r_mcangle_it 1.966 r_angle_refined_deg 1.894 r_mcbond_it 1.219 r_nbtor_refined 0.318 r_nbd_refined 0.225 r_symmetry_vdw_refined 0.224 r_symmetry_hbond_refined 0.205
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.111 r_scangle_it 4.218 r_scbond_it 3.045 r_mcangle_it 1.966 r_angle_refined_deg 1.894 r_mcbond_it 1.219 r_nbtor_refined 0.318 r_nbd_refined 0.225 r_symmetry_vdw_refined 0.224 r_symmetry_hbond_refined 0.205 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.138 r_bond_refined_d 0.024 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2748 Nucleic Acid Atoms Solvent Atoms 107 Heterogen Atoms 31
Software Software Software Name Purpose AMoRE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling PDB_EXTRACT data extraction