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Coproporphyrinogen III oxidase from Leishmania major
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 290 0.4 ul protein 19 mg/ml, 0.4 ul crystallization buffer: 29% PEG 5000MME, 200 mM Ammonium sulfate, 100 mM MES, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.4 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.649 α = 86.456 b = 53.734 β = 77.126 c = 66.627 γ = 61.501
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 210 2004-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.401 64.55 95.1 0.074 7.64 3.85 238100 116623
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.43 92.9 0.51 2.1 3.6
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION 1.401 40 116622 5858 0.1514 0.1804 0.2105 15.325
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.007 -0.287 0.281 0.314 -0.06 -0.165
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.124 r_dihedral_angle_4_deg 15.844 r_dihedral_angle_3_deg 13.563 r_dihedral_angle_1_deg 5.979 r_scangle_it 5.333 r_scbond_it 3.747 r_mcangle_it 3.491 r_mcbond_it 2.836 r_scangle_other 2.689 r_angle_refined_deg 2.522
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.124 r_dihedral_angle_4_deg 15.844 r_dihedral_angle_3_deg 13.563 r_dihedral_angle_1_deg 5.979 r_scangle_it 5.333 r_scbond_it 3.747 r_mcangle_it 3.491 r_mcbond_it 2.836 r_scangle_other 2.689 r_angle_refined_deg 2.522 r_mcangle_other 2.072 r_scbond_other 1.288 r_angle_other_deg 1.077 r_mcbond_other 0.67 r_symmetry_vdw_refined 0.435 r_symmetry_vdw_other 0.281 r_nbd_refined 0.233 r_nbd_other 0.213 r_nbtor_refined 0.208 r_xyhbond_nbd_refined 0.167 r_chiral_restr 0.149 r_symmetry_hbond_refined 0.141 r_nbtor_other 0.1 r_xyhbond_nbd_other 0.031 r_bond_refined_d 0.021 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4694 Nucleic Acid Atoms Solvent Atoms 644 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing SHELX phasing RESOLVE phasing REFMAC refinement SHELXD phasing