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Crystal structure of a predicted glycosidase (tm1225) from thermotoga maritima msb8 at 2.10 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 6.5 293 Cacodylate pH 6.5, 5% PEG-1000, 0.2M MgCl2 , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.36 47.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.867 α = 90 b = 100.908 β = 90 c = 253.433 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2004-02-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.115896, 0.979508, 0.979740, 1.019778 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.098 100.91 91.2 0.086 11.3 4.1 119326 40.37
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 78.4 0.521 1.5 2.5 7509
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 82.17 113119 6056 91.28 0.16417 0.16203 0.1622 0.20404 0.2047 RANDOM 32.363
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 1.62 -1.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.905 r_dihedral_angle_4_deg 20.256 r_dihedral_angle_3_deg 14.538 r_dihedral_angle_1_deg 6.933 r_scangle_it 6.376 r_scbond_it 4.53 r_mcangle_it 2.461 r_mcbond_it 1.532 r_angle_refined_deg 1.418 r_nbd_refined 0.207
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.905 r_dihedral_angle_4_deg 20.256 r_dihedral_angle_3_deg 14.538 r_dihedral_angle_1_deg 6.933 r_scangle_it 6.376 r_scbond_it 4.53 r_mcangle_it 2.461 r_mcbond_it 1.532 r_angle_refined_deg 1.418 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.155 r_xyhbond_nbd_refined 0.138 r_symmetry_hbond_refined 0.134 r_chiral_restr 0.095 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15853 Nucleic Acid Atoms Solvent Atoms 954 Heterogen Atoms 16
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing SHARP phasing autoSHARP phasing SOLOMON phasing REFMAC refinement CCP4 data scaling