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Crystal structure of GTP binding regulator (TM1622) from Thermotoga Maritima at 1.75 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 277 12.0% PEG-20000, 0.1M MES, pH 6.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.32 46.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.73 α = 90 b = 57.73 β = 90 c = 87.944 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-01-22 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.99186, 0.97951, 0.97933 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 29.31 93.2 0.068 14.4 4.4 16407 25.41
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.85 63.9 0.339 2.3 1.7 1586
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.75 29.31 15549 832 93.16 0.15019 0.1486 0.1624 0.18179 0.1921 RANDOM 23.241
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.01 -0.02 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.444 r_dihedral_angle_3_deg 12.467 r_dihedral_angle_4_deg 10.793 r_dihedral_angle_1_deg 5.627 r_scangle_it 4.192 r_scbond_it 3.196 r_mcangle_it 2.897 r_mcbond_it 2.299 r_angle_refined_deg 1.49 r_angle_other_deg 0.738
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.444 r_dihedral_angle_3_deg 12.467 r_dihedral_angle_4_deg 10.793 r_dihedral_angle_1_deg 5.627 r_scangle_it 4.192 r_scbond_it 3.196 r_mcangle_it 2.897 r_mcbond_it 2.299 r_angle_refined_deg 1.49 r_angle_other_deg 0.738 r_mcbond_other 0.554 r_symmetry_vdw_other 0.245 r_symmetry_hbond_refined 0.225 r_nbd_refined 0.195 r_nbtor_refined 0.187 r_nbd_other 0.171 r_symmetry_vdw_refined 0.164 r_xyhbond_nbd_refined 0.15 r_chiral_restr 0.09 r_nbtor_other 0.085 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1098 Nucleic Acid Atoms Solvent Atoms 172 Heterogen Atoms 24
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHELXD phasing autoSHARP phasing REFMAC refinement CCP4 data scaling