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Crystal structure of the apbe protein (tm1553) from thermotoga maritima msb8 at 1.58 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 5 277 10.0% MPD, 0.1M Citrate pH 5.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.37 47.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.742 α = 90 b = 76.946 β = 90 c = 86.587 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-01-22 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.97950,1.00003 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 20.61 96.2 0.096 0.096 5 3.2 51395
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.62 73.5 0.703 0.703 0.9 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.58 20.61 48704 2622 95.8 0.159 0.157 0.191 0.1976 RANDOM 11.296
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 -0.04 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.872 r_dihedral_angle_3_deg 11.64 r_dihedral_angle_4_deg 11.004 r_scangle_it 7.327 r_dihedral_angle_1_deg 5.661 r_scbond_it 5.549 r_mcangle_it 3.206 r_mcbond_it 2.872 r_angle_refined_deg 1.564 r_angle_other_deg 0.887
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.872 r_dihedral_angle_3_deg 11.64 r_dihedral_angle_4_deg 11.004 r_scangle_it 7.327 r_dihedral_angle_1_deg 5.661 r_scbond_it 5.549 r_mcangle_it 3.206 r_mcbond_it 2.872 r_angle_refined_deg 1.564 r_angle_other_deg 0.887 r_mcbond_other 0.604 r_symmetry_vdw_other 0.294 r_nbd_refined 0.243 r_nbtor_refined 0.187 r_nbd_other 0.184 r_xyhbond_nbd_refined 0.177 r_symmetry_hbond_refined 0.155 r_symmetry_vdw_refined 0.115 r_chiral_restr 0.104 r_nbtor_other 0.085 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2413 Nucleic Acid Atoms Solvent Atoms 400 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SOLVE phasing