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P4 protein from Bacteriophage PHI12 apo state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W44 PDB ENTRY 1W44
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 295 10% PEG 1500, 100MM SODIUM ACETATE PH 4.8 PROTEIN CONCENTRATION 10 MG/ML, SITTING DROPS, 22C
Crystal Properties Matthews coefficient Solvent content 2.5 50.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.4 α = 90 b = 126.3 β = 91.6 c = 155.6 γ = 90.5
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2002-07-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 96 0.06 18.6 9.7 291757 51.632
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 77 0.32 3.9 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1W44 2.5 20 291712 14485 96 0.2514 0.2514 0.2236 0.2563 RANDOM 45.91
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.866 1.822 -6.689
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 5.797 c_mcangle_it 4.476 c_scbond_it 4.072 c_mcbond_it 2.835 c_angle_deg 1.34 c_bond_d 0.006 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 5.797 c_mcangle_it 4.476 c_scbond_it 4.072 c_mcbond_it 2.835 c_angle_deg 1.34 c_bond_d 0.006 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 54108 Nucleic Acid Atoms Solvent Atoms 3162 Heterogen Atoms
Software Software Software Name Purpose CNS refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing