☰ Navigation Tabs
Active site thrombin inhibitors
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QJ1 PDB ENTRY 1QJ1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 PH 7.50
Crystal Properties Matthews coefficient Solvent content 2.5 50.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.392 α = 90 b = 71.785 β = 99.87 c = 71.733 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU CCD CONFOCAL MULTILAYER 2002-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 27 97.6 0.07 10.1 2.04 17712
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 95.4 0.23 3.6 1.85
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1QJ1 2.2 27.21 16409 876 97.6 0.171 0.166 0.265 RANDOM 22.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.22 -0.38 -1.47 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.616 r_dihedral_angle_4_deg 18.186 r_dihedral_angle_3_deg 13.831 r_dihedral_angle_1_deg 6.863 r_scangle_it 4.498 r_mcangle_it 3.719 r_scbond_it 3.495 r_mcbond_it 3.2 r_angle_refined_deg 1.43 r_angle_other_deg 0.808
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.616 r_dihedral_angle_4_deg 18.186 r_dihedral_angle_3_deg 13.831 r_dihedral_angle_1_deg 6.863 r_scangle_it 4.498 r_mcangle_it 3.719 r_scbond_it 3.495 r_mcbond_it 3.2 r_angle_refined_deg 1.43 r_angle_other_deg 0.808 r_symmetry_vdw_other 0.275 r_nbd_refined 0.213 r_nbd_other 0.187 r_nbtor_refined 0.18 r_symmetry_vdw_refined 0.15 r_xyhbond_nbd_refined 0.144 r_symmetry_hbond_refined 0.104 r_chiral_restr 0.089 r_nbtor_other 0.085 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.004 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2369 Nucleic Acid Atoms Solvent Atoms 388 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling IN-HOUSE phasing