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Crystal structure of TT0310 protein from Thermus thermophilus HB8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 5.2 295 Isopropanol, coenzyme A, acetate-NaOH, pH 5.2, Microbatch, temperature 295.0K
Crystal Properties Matthews coefficient Solvent content 1.87 33.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.09 α = 90 b = 82.583 β = 92.16 c = 59.39 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS V Mirror 2002-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 100 0.086 11.7 7.2 66249 22.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 100 0.351 5.6 7 13103
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 30 66249 3355 99.8 0.17 0.17 0.1707 0.19 0.1909 random 23.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 1.59 -0.55 1.03
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 25.3 c_improper_angle_d 3.49 c_scangle_it 3.31 c_scbond_it 2.21 c_mcangle_it 1.81 c_mcbond_it 1.26 c_angle_deg 1.2 c_bond_d 0.005 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 25.3 c_improper_angle_d 3.49 c_scangle_it 3.31 c_scbond_it 2.21 c_mcangle_it 1.81 c_mcbond_it 1.26 c_angle_deg 1.2 c_bond_d 0.005 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6937 Nucleic Acid Atoms Solvent Atoms 686 Heterogen Atoms 198
Software Software Software Name Purpose HKL-2000 data collection SCALEPACK data scaling AMoRE phasing CNS refinement HKL-2000 data reduction