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D136A mutant of Heme Oxygenase from Corynebacterium diphtheriae (HmuO)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 MES, Ammonium sulfate, sodium iodide, dioxane, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.49 50.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.129 α = 90 b = 62.781 β = 101 c = 107.993 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 210 2003-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 98.3 59737 59737
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.92 97.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 20 53640 53640 6049 98.12 0.16776 0.16776 0.16363 0.20428 0.2032 RANDOM 15.173
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.43 0.47 0.62 -0.02
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.705 r_dihedral_angle_1_deg 5.376 r_scbond_it 3.526 r_mcangle_it 2.155 r_angle_refined_deg 1.777 r_mcbond_it 1.203 r_angle_other_deg 0.988 r_nbd_other 0.247 r_symmetry_vdw_other 0.243 r_nbd_refined 0.224
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.705 r_dihedral_angle_1_deg 5.376 r_scbond_it 3.526 r_mcangle_it 2.155 r_angle_refined_deg 1.777 r_mcbond_it 1.203 r_angle_other_deg 0.988 r_nbd_other 0.247 r_symmetry_vdw_other 0.243 r_nbd_refined 0.224 r_symmetry_hbond_refined 0.16 r_xyhbond_nbd_refined 0.152 r_symmetry_vdw_refined 0.136 r_chiral_restr 0.116 r_nbtor_other 0.087 r_metal_ion_refined 0.082 r_bond_refined_d 0.021 r_gen_planes_other 0.02 r_gen_planes_refined 0.015 r_bond_other_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4964 Nucleic Acid Atoms Solvent Atoms 308 Heterogen Atoms 154
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling CNS phasing