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Crystal structure of the C-terminal domain of the end-binding protein 1 (EB1)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 298 sodium citrate, PEG 3350, gamma-butyrolactone, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.76 30
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32 α = 90 b = 37.3 β = 105.4 c = 56.5 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate Osmic mirrors 2004-04-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.54 55 97.4 0.04 14.8 2.9 18705 18705 -3 24
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.54 1.6 90.1 0.188 5.4 2.4 1850
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.54 54.23 17745 17745 959 97.6 0.183 0.183 0.181 0.2012 0.22 0.235 RANDOM 21
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.6 -0.45 -0.24 -1.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.553 r_dihedral_angle_3_deg 12.891 r_dihedral_angle_4_deg 8.41 r_scangle_it 7.641 r_scbond_it 5.634 r_dihedral_angle_1_deg 4.098 r_mcangle_it 2.836 r_mcbond_it 2.625 r_angle_refined_deg 1.177 r_angle_other_deg 0.743
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.553 r_dihedral_angle_3_deg 12.891 r_dihedral_angle_4_deg 8.41 r_scangle_it 7.641 r_scbond_it 5.634 r_dihedral_angle_1_deg 4.098 r_mcangle_it 2.836 r_mcbond_it 2.625 r_angle_refined_deg 1.177 r_angle_other_deg 0.743 r_mcbond_other 0.643 r_nbd_refined 0.227 r_symmetry_vdw_refined 0.205 r_symmetry_vdw_other 0.202 r_xyhbond_nbd_refined 0.17 r_symmetry_hbond_refined 0.161 r_nbd_other 0.158 r_nbtor_other 0.084 r_chiral_restr 0.063 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1030 Nucleic Acid Atoms Solvent Atoms 119 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data scaling SHARP phasing