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Catalytic Domain Of Human Phosphodiesterase 4B In Complex With (R,S)-Rolipram
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10 277 ammonium sulfate and lithium sulfate , pH 10.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.0K
Crystal Properties Matthews coefficient Solvent content 2.49 50.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.926 α = 90 b = 94.996 β = 90 c = 106.833 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 210 2003-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.31 70.71 98.6 0.091 5 3.8 38227 38227
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.31 2.37 100 0.345 3 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.31 70.71 38227 38227 2013 98.64 0.20757 0.2053 0.2497 0.2861 RANDOM 19.927
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.05 -1.5 3.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 3.288 r_scangle_it 3.171 r_scbond_it 1.998 r_angle_refined_deg 1.587 r_mcangle_it 1.174 r_angle_other_deg 1.093 r_mcbond_it 0.629 r_symmetry_vdw_other 0.321 r_nbd_other 0.224 r_nbd_refined 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 3.288 r_scangle_it 3.171 r_scbond_it 1.998 r_angle_refined_deg 1.587 r_mcangle_it 1.174 r_angle_other_deg 1.093 r_mcbond_it 0.629 r_symmetry_vdw_other 0.321 r_nbd_other 0.224 r_nbd_refined 0.22 r_symmetry_hbond_refined 0.215 r_metal_ion_refined 0.182 r_xyhbond_nbd_refined 0.158 r_symmetry_vdw_refined 0.156 r_nbtor_other 0.109 r_chiral_restr 0.1 r_bond_refined_d 0.018 r_gen_planes_refined 0.011 r_gen_planes_other 0.006 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5250 Nucleic Acid Atoms Solvent Atoms 209 Heterogen Atoms 84
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection ELVES data scaling EPMR phasing