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Solution Structure of Pyrococcus furiosus Protein PF0470: The Northeast Structural Genomics Consortium Target PfR14
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 GFT (4,3)D HNNCabCa 1.02 mM, NMR Buffer 6.5, 5% D2O, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5 90% H2O/10% D2O 6.5 ambient 298 2 GFT (4,3)D CabCa(CO)NHN 1.02 mM, NMR Buffer 6.5, 5% D2O, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5 90% H2O/10% D2O 6.5 ambient 298 3 GFT (4,3)D HabCab(CO)NHN 1.02 mM, NMR Buffer 6.5, 5% D2O, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5 90% H2O/10% D2O 6.5 ambient 298 4 GFT (4,3) HCCH 1.02 mM, NMR Buffer 6.5, 5% D2O, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5 90% H2O/10% D2O 6.5 ambient 298 5 Simultaneous Heteronuclear Resolved -NOESY 1.02 mM, NMR Buffer 6.5, 5% D2O, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5 90% H2O/10% D2O 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 750 2 Varian INOVA 600
NMR Refinement Method Details Software simulated annealing
molecular dynamics
torsion angle dynamics NMRPipe
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Additional NMR Experimental Information Details High throughput structure determination by GFT NMR techniques
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe 2.3 Delaglio, F. 2 data analysis XEASY 1.3.1.3 Bartels, C. 3 structure solution DYANA 1.5 Guentert, P. 4 refinement DYANA 1.5 Guentert, P. 5 data analysis AutoAssign 1.13.2 Zimmerman, D.E. 6 data analysis CYANA 1.0.5 Guentert, P 7 data analysis AutoStructure 2.0.0 Huang, Y.J.