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Structure of Phosphoglycerate Mutase from Plasmodium falciparum at 2.6 Resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 Potassium Thiocyanate 0.1M, PEG 1000, 42%, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 25K
Crystal Properties Matthews coefficient Solvent content 2.49 50.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.241 α = 90 b = 71.516 β = 113.79 c = 74.883 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2004-09-09 M SINGLE WAVELENGTH
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.58 20 16331
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.58 20 17717 15550 781 87.77 0.21055 0.2073 0.2059 0.27192 0.2722 RANDOM 24.507
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.41 1.18 0.65 0.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.102 r_dihedral_angle_3_deg 20.651 r_dihedral_angle_4_deg 18.009 r_dihedral_angle_1_deg 6.824 r_scangle_it 3.097 r_scbond_it 1.927 r_angle_refined_deg 1.819 r_mcangle_it 1.236 r_mcbond_it 0.656 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.102 r_dihedral_angle_3_deg 20.651 r_dihedral_angle_4_deg 18.009 r_dihedral_angle_1_deg 6.824 r_scangle_it 3.097 r_scbond_it 1.927 r_angle_refined_deg 1.819 r_mcangle_it 1.236 r_mcbond_it 0.656 r_nbtor_refined 0.312 r_nbd_refined 0.238 r_symmetry_vdw_refined 0.234 r_symmetry_hbond_refined 0.192 r_xyhbond_nbd_refined 0.159 r_chiral_restr 0.113 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3926 Nucleic Acid Atoms Solvent Atoms 52 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement