☰ Navigation Tabs
X-ray structure of gene product from Arabidopsis thaliana At3g21360
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 10 MG/ML PROTEIN, 16% GLYCEROL,
1.80 M AMMONIUM SULFATE, 0.100 M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K 2 VAPOR DIFFUSION, HANGING DROP 7.5 277 10 MG/ML PROTEIN, 15% GLYCEROL,
1.75 M AMMONIUM SULFATE, 0.100 M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 145.276 α = 90 b = 61.094 β = 121.68 c = 114.681 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD APS-1 sagitally focusing 2nd crystal,
Rosenbaum-Rock vertical focusing mirror 2004-07-31 M SINGLE WAVELENGTH 2 2 x-ray 100 CCD MAR CCD 165 mm bent cylindrical Si-mirror (Rh coating) 2004-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97954 APS 19-BM 2 SYNCHROTRON APS BEAMLINE 14-ID-B 0.97927 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.39 43.63 99.8 0.079 12.572 3.6 34020 34020 22.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.4 2.46 99.9 0.283 4.451 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.4 43.63 33755 32733 1628 97 0.193 0.1973 0.241 0.2432 RANDOM 35.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.59 4.42 -0.37 -2.22
RMS Deviations Key Refinement Restraint Deviation x_torsion_deg 23.7 x_scangle_it 13.48 x_scbond_it 9.6 x_mcangle_it 9.43 x_mcbond_it 6.08 x_angle_deg 1.3 x_torsion_impr_deg 0.92 x_bond_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5139 Nucleic Acid Atoms Solvent Atoms 780 Heterogen Atoms 22
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling CNS phasing RESOLVE phasing CNS refinement PDB_EXTRACT data extraction