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human formylglycine generating enzyme, sulfonic acid/desulfurated form
Crystallization Crystal Properties Matthews coefficient Solvent content 2.12 41.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.18 α = 90 b = 109.655 β = 90 c = 43.484 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 54.88 80.7 0.043 26.5 2.6 35522
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.61 19.1 0.162 3.3 1.25 820
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.55 41.1 33756 1722 81.21 0.1597 0.15803 0.19301 0.2025 RANDOM 13.348
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 0.43 -0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.726 r_dihedral_angle_4_deg 17.209 r_dihedral_angle_3_deg 12.836 r_dihedral_angle_1_deg 6.475 r_scangle_it 2.737 r_scbond_it 1.825 r_angle_refined_deg 1.341 r_mcangle_it 1.206 r_angle_other_deg 0.795 r_mcbond_it 0.784
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.726 r_dihedral_angle_4_deg 17.209 r_dihedral_angle_3_deg 12.836 r_dihedral_angle_1_deg 6.475 r_scangle_it 2.737 r_scbond_it 1.825 r_angle_refined_deg 1.341 r_mcangle_it 1.206 r_angle_other_deg 0.795 r_mcbond_it 0.784 r_symmetry_hbond_refined 0.223 r_nbd_refined 0.203 r_nbd_other 0.195 r_symmetry_vdw_refined 0.191 r_symmetry_vdw_other 0.188 r_mcbond_other 0.187 r_nbtor_refined 0.186 r_xyhbond_nbd_refined 0.165 r_nbtor_other 0.083 r_chiral_restr 0.079 r_metal_ion_refined 0.078 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2180 Nucleic Acid Atoms Solvent Atoms 471 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement