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Crystal structure of VEGFR2 in complex with a 2-anilino-5-aryl-oxazole inhibitor
Crystallization Crystal Properties Matthews coefficient Solvent content 2.06 40.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.732 α = 90 b = 94.57 β = 90 c = 96.473 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 99.7 20720 20720 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.17 97.8 0.376 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 19.87 20196 606 99.78 0.1962 0.19557 0.2172 RANDOM 35.726
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.2 -0.26 -1.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.907 r_dihedral_angle_4_deg 20.32 r_dihedral_angle_3_deg 15.042 r_dihedral_angle_1_deg 6.212 r_scangle_it 2.716 r_scbond_it 2.008 r_angle_refined_deg 1.589 r_mcangle_it 1.426 r_mcbond_it 1.261 r_angle_other_deg 0.867
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.907 r_dihedral_angle_4_deg 20.32 r_dihedral_angle_3_deg 15.042 r_dihedral_angle_1_deg 6.212 r_scangle_it 2.716 r_scbond_it 2.008 r_angle_refined_deg 1.589 r_mcangle_it 1.426 r_mcbond_it 1.261 r_angle_other_deg 0.867 r_symmetry_hbond_refined 0.341 r_xyhbond_nbd_refined 0.256 r_nbd_refined 0.217 r_nbd_other 0.19 r_mcbond_other 0.19 r_nbtor_refined 0.185 r_symmetry_vdw_other 0.17 r_nbtor_other 0.087 r_symmetry_vdw_refined 0.084 r_chiral_restr 0.079 r_bond_refined_d 0.013 r_gen_planes_other 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2099 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement MAR345 data collection SCALEPACK data scaling AMoRE phasing