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Crystal Structure of RV0983 from Mycobacterium tuberculosis- Proteolytically active form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other CRYSTAL STRUCTURE OF RV1223 (STRUCTURE of RV1223 has been SOLVED at HOME, TO BE SUBMITTED TO PDB SOON)
Crystallization Crystal Properties Matthews coefficient Solvent content 2.36 47.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 149.584 α = 90 b = 89.067 β = 97.55 c = 69.408 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2004-07-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.979, 0.94181, 0.97923 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 76.7 93.8 0.05 24.12 7.4 76977
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.99 76 0.9 0.87 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT CRYSTAL STRUCTURE OF RV1223 (STRUCTURE of RV1223 has been SOLVED at HOME, TO BE SUBMITTED TO PDB SOON) 2 76.7 57235 57235 3078 98.8 0.22931 0.22652 0.28027 RANDOM 40.742
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 0.5 -0.89 1.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.932 r_dihedral_angle_3_deg 21.87 r_dihedral_angle_4_deg 15.285 r_dihedral_angle_1_deg 12.996 r_scangle_it 5.58 r_scbond_it 3.694 r_angle_refined_deg 3.164 r_mcangle_it 2.146 r_mcbond_it 1.47 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.932 r_dihedral_angle_3_deg 21.87 r_dihedral_angle_4_deg 15.285 r_dihedral_angle_1_deg 12.996 r_scangle_it 5.58 r_scbond_it 3.694 r_angle_refined_deg 3.164 r_mcangle_it 2.146 r_mcbond_it 1.47 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.277 r_nbd_refined 0.258 r_chiral_restr 0.253 r_xyhbond_nbd_refined 0.226 r_symmetry_hbond_refined 0.203 r_bond_refined_d 0.035 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5431 Nucleic Acid Atoms Solvent Atoms 318 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHARP phasing