1YBZ

Conserved hypothetical protein from Pyrococcus furiosus Pfu-1581948-001

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	modified microbatch	7.5	291	0.8M sodium dihydrogen phosphate, 0.8M disodium hydrogen phosphate, 0.1M HEPES, pH 7.5, modified microbatch, temperature 291K

Crystal Properties
Matthews coefficient	Solvent content
2.54	51.63

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 52.501	α = 90
b = 52.501	β = 90
c = 80.217	γ = 90

Symmetry
Space Group	P 43 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARMOSAIC 300 mm CCD			M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 22-ID	1.0090	APS	22-ID

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.82	50	99.4	0.055				10567

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.82	1.89	95		0.231

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAS	THROUGHOUT	1.82	43.937	10521	497	99.32	0.203	0.20257	0.2009	0.22	0.2366	0.25	RANDOM	17.032

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.033			0.033		-0.066

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	27.236
r_dihedral_angle_4_deg	21.842
r_dihedral_angle_3_deg	11.379
r_scangle_it	4.622
r_dihedral_angle_1_deg	4.15
r_angle_other_deg	3.939
r_mcangle_it	3.049
r_scbond_it	2.8
r_scangle_other	2.24
r_mcangle_other	2.027
r_mcbond_it	2.003
r_angle_refined_deg	1.238
r_symmetry_vdw_refined	0.321
r_symmetry_vdw_other	0.283
r_nbd_refined	0.217
r_nbd_other	0.21
r_nbtor_refined	0.165
r_xyhbond_nbd_refined	0.12
r_nbtor_other	0.097
r_chiral_restr	0.085
r_symmetry_hbond_refined	0.069
r_bond_refined_d	0.013
r_gen_planes_other	0.006
r_gen_planes_refined	0.005
r_bond_other_d
r_mcbond_other
r_scbond_other

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	591
Nucleic Acid Atoms
Solvent Atoms	61
Heterogen Atoms	3

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
RESOLVE	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345	data collection
ARP/wARP	model building