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Structure of the complex of Trypanosoma cruzi farnesyl diphosphate synthase with risedronate, dmapp and mg+2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIQUID DIFFUSION 4.6 295 pH 4.6, LIQUID DIFFUSION, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.31 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.152 α = 90 b = 58.152 β = 90 c = 389.512 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-06-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.1 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 64.55 98.1 0.087 0.087 12.4 8.9 29502
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.95 64.55 27981 1497 98.09 0.17657 0.17357 0.23223 RANDOM 25.746
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 0.19 0.39 -0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.558 r_dihedral_angle_4_deg 22.245 r_dihedral_angle_3_deg 15.473 r_dihedral_angle_1_deg 6.525 r_scangle_it 5.113 r_scbond_it 3.547 r_angle_refined_deg 2.248 r_mcangle_it 2.069 r_mcbond_it 1.58 r_symmetry_hbond_refined 0.378
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.558 r_dihedral_angle_4_deg 22.245 r_dihedral_angle_3_deg 15.473 r_dihedral_angle_1_deg 6.525 r_scangle_it 5.113 r_scbond_it 3.547 r_angle_refined_deg 2.248 r_mcangle_it 2.069 r_mcbond_it 1.58 r_symmetry_hbond_refined 0.378 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.286 r_chiral_restr 0.28 r_nbd_refined 0.256 r_xyhbond_nbd_refined 0.232 r_metal_ion_refined 0.035 r_bond_refined_d 0.027 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2891 Nucleic Acid Atoms Solvent Atoms 392 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction CCP4 data scaling AMoRE phasing