1YIU
Itch E3 ubiquitin ligase WW3 domain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | Unlabeled sample | Sodium Phosphate 20mM, Sodium Chloride 100mM | Na2HPO4 20mM NaCl 100mM | 6.0 | 1 atm | 285 | |
2 | 2D TOCSY | Unlabeled sample | Sodium Phosphate 20mM, Sodium Chloride 100mM | Na2HPO4 20mM NaCl 100mM | 6.0 | 1 atm | 285 | |
3 | 3D_15N-separated_NOESY | Uniform labeling with 15N | Sodium Phosphate 20mM, Sodium Chloride 100mM | Na2HPO4 20mM NaCl 100mM | 6.0 | 1 atm | 285 | |
4 | 3D_13C-separated_NOESY | Uniform labeling with 15N, 13C | Sodium Phosphate 20mM, Sodium Chloride 100mM | Na2HPO4 20mM NaCl 100mM | 6.0 | 1 atm | 285 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | DRX | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing, torsion angle dynamics | The employed refinement engine was CNS 1.1 , but using the water refinement CNS scripts supplied with ARIA 2.0a | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 8 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3 | Bruker GMBH |
2 | processing | NMRPipe | 2.2 | Delaglio, F. |
3 | data analysis | XEASY | 1.3 | Bartels, C. |
4 | structure solution | CNS | 1.1 | Bruenger |
5 | structure solution | ARIA | 2.0a | Nilges, M. |
6 | refinement | ARIA | 2.0a | Nilges, M. |
7 | refinement | CNS | 1.1 | Bruenger |