☰ Navigation Tabs
Crystal structure of ketopantoate reductase in complex with NADP+
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KS9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 290 10% MPD, 0.1M Sodium Acetate, 2mM NADP+, 2mM ketopantoate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 3.12 60.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.833 α = 90 b = 66.138 β = 90 c = 98.808 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-05-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 0.979 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 55.05 99.7 0.092 14 26.2 24200 2 23.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.15 99.9 0.436 3.2 1560
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1KS9 2.09 28 24200 22838 1231 98.87 0.16173 0.16173 0.15995 0.1735 0.19368 0.1976 RANDOM 22.598
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 0.72 -0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.201 r_scangle_it 5.49 r_scbond_it 3.484 r_mcangle_it 2.458 r_angle_refined_deg 1.903 r_mcbond_it 1.387 r_angle_other_deg 0.929 r_nbd_other 0.278 r_symmetry_vdw_other 0.276 r_symmetry_vdw_refined 0.223
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.201 r_scangle_it 5.49 r_scbond_it 3.484 r_mcangle_it 2.458 r_angle_refined_deg 1.903 r_mcbond_it 1.387 r_angle_other_deg 0.929 r_nbd_other 0.278 r_symmetry_vdw_other 0.276 r_symmetry_vdw_refined 0.223 r_nbd_refined 0.217 r_xyhbond_nbd_refined 0.212 r_symmetry_hbond_refined 0.164 r_chiral_restr 0.114 r_nbtor_other 0.089 r_bond_refined_d 0.024 r_gen_planes_other 0.013 r_gen_planes_refined 0.01 r_bond_other_d 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2302 Nucleic Acid Atoms Solvent Atoms 230 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing