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Crystal structure of estrogen receptor beta complexed with way-202196
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1A52 ours ER-beta-genistein complex structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7.8 291 20% PEG3350, 0.2M Mg Acetate, pH7.8, EVAPORATION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.4 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.075 α = 90 b = 88.504 β = 90 c = 100.139 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 1.1 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 20 98.5 0.053 0.073 18.2 3.98 30846 30401 15.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.03 2.1 95.7 0.489 0.489 2.8 3.8 2910
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT ours ER-beta-genistein complex structure 2.03 20 30613 30322 1504 99 0.226 0.223 0.223 0.269 RANDOM 26.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.27 1.6 -0.32
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 18.3 c_scangle_it 2.33 c_mcangle_it 1.68 c_scbond_it 1.53 c_angle_deg 1.3 c_mcbond_it 0.99 c_improper_angle_d 0.8 c_bond_d 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3732 Nucleic Acid Atoms Solvent Atoms 299 Heterogen Atoms 42
Software Software Software Name Purpose CNS refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing