1YYJ
The NMR solution structure of a redesigned apocytochrome b562:Rd-apocyt b562
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D HSQC | 1.5mM Rd apocytochrome B562, 15N and/or 13C uniformly labeled | 50mM Sodium acetate, pH 4.84, 92.5% H2O, 7.5% D2O | 4.84 | ambient | 298 | ||
2 | 3D_13C-separated_NOESY | 1.5mM Rd apocytochrome B562, 15N and/or 13C uniformly labeled | 50mM Sodium acetate, pH 4.84, 92.5% H2O, 7.5% D2O | 4.84 | ambient | 298 | ||
3 | 3D_15N-separated_NOESY | 1.5mM Rd apocytochrome B562, 15N and/or 13C uniformly labeled | 50mM Sodium acetate, pH 4.84, 92.5% H2O, 7.5% D2O | 4.84 | ambient | 298 | ||
4 | HNHA | 1.5mM Rd apocytochrome B562, 15N and/or 13C uniformly labeled | 50mM Sodium acetate, pH 4.84, 92.5% H2O, 7.5% D2O | 4.84 | ambient | 298 | ||
5 | 3D HNCACB, 3D CBCA(CO)NH | 1.5mM Rd apocytochrome B562, 15N and/or 13C uniformly labeled | 50mM Sodium acetate, pH 4.84, 92.5% H2O, 7.5% D2O | 4.84 | ambient | 298 | ||
6 | 3D HBHA(CO)NH | 1.5mM Rd apocytochrome B562, 15N and/or 13C uniformly labeled | 50mM Sodium acetate, pH 4.84, 92.5% H2O, 7.5% D2O | 4.84 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | Bruker | DRX | 750 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
distance geometry, simulated annealing, molecular dynamics, matrix relaxation, torsion angle dynamics | X-PLOR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (n/a) |
Additional NMR Experimental Information | |
---|---|
Details | Residual dipolar coupling, 2D NOESY, 3D HNCA, etc. |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR | NIH-2.9 | |
2 | processing | NMRPipe | ||
3 | refinement | X-PLOR | NIH-2.9 |