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Crystal Structure of A. fulgidus Lon proteolytic domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 295 PEG 8000, calcium acetate, sodium cacodylate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.16 43.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.68 α = 90 b = 86.11 β = 94.7 c = 135.61 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH mirrors 2004-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 50 96.5 68204 68204 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.102 76.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.05 15 2 66679 1009 100 0.21462 0.21339 0.2113 0.29939 0.2999 RANDOM 38.158
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.42 0.02 -1.52 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.9 r_dihedral_angle_4_deg 24.202 r_dihedral_angle_3_deg 21.475 r_dihedral_angle_1_deg 8.056 r_scangle_it 5.296 r_scbond_it 3.528 r_angle_refined_deg 2.493 r_mcangle_it 2.167 r_mcbond_it 1.433 r_symmetry_vdw_refined 0.352
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.9 r_dihedral_angle_4_deg 24.202 r_dihedral_angle_3_deg 21.475 r_dihedral_angle_1_deg 8.056 r_scangle_it 5.296 r_scbond_it 3.528 r_angle_refined_deg 2.493 r_mcangle_it 2.167 r_mcbond_it 1.433 r_symmetry_vdw_refined 0.352 r_nbtor_refined 0.309 r_nbd_refined 0.28 r_xyhbond_nbd_refined 0.226 r_symmetry_hbond_refined 0.218 r_chiral_restr 0.19 r_bond_refined_d 0.033 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8733 Nucleic Acid Atoms Solvent Atoms 552 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345 data collection SCALEPACK data scaling AMoRE phasing