☰ Navigation Tabs
Crystal Structure of A. fulgidus Lon proteolytic domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 295 PEG 400, calcium acetate, sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.13 42.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.65 α = 90 b = 88.69 β = 90 c = 147.24 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH mirrors 2004-05-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.27 20 97.1 50449 50449 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.27 2.328 95.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.27 15 2 49274 1038 100 0.1983 0.19545 0.2115 0.32876 0.3384 RANDOM 14.024
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.93 2.98 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.856 r_dihedral_angle_4_deg 25.996 r_dihedral_angle_3_deg 22.641 r_dihedral_angle_1_deg 9.842 r_scangle_it 6.594 r_scbond_it 4.425 r_angle_refined_deg 3.243 r_mcangle_it 2.647 r_mcbond_it 1.813 r_nbtor_refined 0.325
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.856 r_dihedral_angle_4_deg 25.996 r_dihedral_angle_3_deg 22.641 r_dihedral_angle_1_deg 9.842 r_scangle_it 6.594 r_scbond_it 4.425 r_angle_refined_deg 3.243 r_mcangle_it 2.647 r_mcbond_it 1.813 r_nbtor_refined 0.325 r_nbd_refined 0.31 r_symmetry_hbond_refined 0.295 r_symmetry_vdw_refined 0.273 r_chiral_restr 0.246 r_xyhbond_nbd_refined 0.244 r_bond_refined_d 0.045 r_gen_planes_refined 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8778 Nucleic Acid Atoms Solvent Atoms 1095 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345 data collection SCALEPACK data scaling AMoRE phasing