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Np95-like ring finger protein isoform b [Homo sapiens]
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 298 0.8 M NA CITRATE, 0.1 M HEPES PH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K, pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.3 46.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.561 α = 90 b = 64.561 β = 90 c = 130.313 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 45.86 98.8 0.09 24.8 7.7 16546 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.18 99.9 0.568 3.37 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 45.86 16546 15705 840 98.76 0.22507 0.22223 0.2216 0.28274 0.2885 RANDOM 42.967
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.62 -0.62 1.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.312 r_dihedral_angle_4_deg 19.824 r_dihedral_angle_3_deg 15.604 r_dihedral_angle_1_deg 5.355 r_scangle_it 3.256 r_scbond_it 2.135 r_mcangle_it 1.57 r_angle_refined_deg 1.315 r_mcbond_it 0.918 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.312 r_dihedral_angle_4_deg 19.824 r_dihedral_angle_3_deg 15.604 r_dihedral_angle_1_deg 5.355 r_scangle_it 3.256 r_scbond_it 2.135 r_mcangle_it 1.57 r_angle_refined_deg 1.315 r_mcbond_it 0.918 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.231 r_nbd_refined 0.208 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.098 r_symmetry_hbond_refined 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2047 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SnB phasing