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X-ray structure of allene oxide cyclase from Arabidopsis thaliana at3g25770
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 293 10 mg/ml protein, 11% PEG 8K, 0.100 M SODIUM ACETATE, pH 4.5, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.9 57.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.412 α = 90 b = 100.013 β = 90 c = 105.386 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD HORIZONTAL SAGITALLY FOCUSING 2ND BENT MONOCHROMATOR CRYSTAL, VERTICAL BENT FOCUSING MIRROR 2005-03-12 M MAD 2 1 3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.97924, 0.97156, 0.97947 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.71 48.166 100 0.075 19.995 14.1 73976
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.71 1.77 99.9 100 0.252 5.811 12.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.712 50 70173 3725 99.86 0.15031 0.15031 0.149 0.1517 0.18 0.1833 RANDOM 14.97
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.51 -0.1 0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.567 r_dihedral_angle_3_deg 12.324 r_dihedral_angle_4_deg 9.11 r_dihedral_angle_1_deg 6.463 r_scangle_it 4.931 r_scbond_it 3.42 r_mcangle_it 2.059 r_angle_refined_deg 1.394 r_mcbond_it 1.22 r_nbtor_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.567 r_dihedral_angle_3_deg 12.324 r_dihedral_angle_4_deg 9.11 r_dihedral_angle_1_deg 6.463 r_scangle_it 4.931 r_scbond_it 3.42 r_mcangle_it 2.059 r_angle_refined_deg 1.394 r_mcbond_it 1.22 r_nbtor_refined 0.314 r_symmetry_hbond_refined 0.215 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.16 r_symmetry_vdw_refined 0.154 r_chiral_restr 0.105 r_bond_refined_d 0.013 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4092 Nucleic Acid Atoms Solvent Atoms 741 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement