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Structure of human ADP-ribosylation factor-like 10B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 291 PEG 4000, Magnesium Chloride, Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2 38.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.731 α = 90 b = 72.092 β = 90 c = 36.416 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2005-03-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 36.05 99.1 0.046 6.7 18430 18430 1 1 22.69
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 91.7 0.225 5.8 1692
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAD THROUGHOUT 1.7 36.05 18402 17464 938 99.08 0.21371 0.21371 0.2118 0.2085 0.24802 0.2443 RANDOM 20.037
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.24 -0.65 0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.695 r_dihedral_angle_4_deg 25.128 r_dihedral_angle_3_deg 13.635 r_dihedral_angle_1_deg 5.254 r_scangle_it 4.051 r_scbond_it 2.771 r_mcangle_it 1.57 r_angle_refined_deg 1.561 r_mcbond_it 1.085 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.695 r_dihedral_angle_4_deg 25.128 r_dihedral_angle_3_deg 13.635 r_dihedral_angle_1_deg 5.254 r_scangle_it 4.051 r_scbond_it 2.771 r_mcangle_it 1.57 r_angle_refined_deg 1.561 r_mcbond_it 1.085 r_nbtor_refined 0.309 r_nbd_refined 0.208 r_symmetry_hbond_refined 0.16 r_symmetry_vdw_refined 0.154 r_xyhbond_nbd_refined 0.118 r_chiral_restr 0.1 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1320 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction CrystalClear data scaling MLPHARE phasing