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Crystal Structure Of The Receiver Domain Of TMAO Respiratory System Response Regulator TorR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 PEG 2000 MME, Ammonium Sulfate, Sodium Acetate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.7 28.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.471 α = 90 b = 58.389 β = 112.25 c = 64.086 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A 0.97888 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 97.7 0.084 20.9 7 35665 34815 -3 17.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 80.4 0.367 3.3 4.7 2834
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 20 35708 30446 3310 95.72 0.19723 0.19219 0.1926 0.2437 0.2425 RANDOM 22.472
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.46 -0.77 0.17 -0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.783 r_scangle_it 2.407 r_mcangle_it 2.14 r_scbond_it 1.471 r_mcbond_it 1.234 r_angle_refined_deg 1.224 r_symmetry_vdw_refined 0.258 r_nbd_refined 0.224 r_symmetry_hbond_refined 0.216 r_xyhbond_nbd_refined 0.186
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.783 r_scangle_it 2.407 r_mcangle_it 2.14 r_scbond_it 1.471 r_mcbond_it 1.234 r_angle_refined_deg 1.224 r_symmetry_vdw_refined 0.258 r_nbd_refined 0.224 r_symmetry_hbond_refined 0.216 r_xyhbond_nbd_refined 0.186 r_chiral_restr 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3747 Nucleic Acid Atoms Solvent Atoms 210 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing