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Structure of R-specific alcohol dehydrogenase (mutant G37D) from Lactobacillus brevis in complex with phenylethanol and NADH
Crystallization Crystal Properties Matthews coefficient Solvent content 2.34 47.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.56 α = 90 b = 79.614 β = 90 c = 112.912 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9155 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.05 35.5 108778 108778
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.05 35.5 108778 104390 4388 93.64 0.13874 0.13874 0.13816 0.1478 0.15215 0.1509 RANDOM 12.965
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.24 -0.05 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.31 r_sphericity_free 5.899 r_sphericity_bonded 4.343 r_scangle_it 3.971 r_scbond_it 2.786 r_mcangle_it 2.103 r_angle_refined_deg 1.876 r_angle_other_deg 1.565 r_rigid_bond_restr 1.554 r_mcbond_it 1.491
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.31 r_sphericity_free 5.899 r_sphericity_bonded 4.343 r_scangle_it 3.971 r_scbond_it 2.786 r_mcangle_it 2.103 r_angle_refined_deg 1.876 r_angle_other_deg 1.565 r_rigid_bond_restr 1.554 r_mcbond_it 1.491 r_symmetry_vdw_refined 0.435 r_symmetry_vdw_other 0.296 r_nbd_other 0.26 r_nbd_refined 0.234 r_xyhbond_nbd_refined 0.218 r_symmetry_hbond_refined 0.2 r_nbtor_other 0.105 r_chiral_restr 0.102 r_gen_planes_refined 0.03 r_bond_refined_d 0.018 r_gen_planes_other 0.018 r_bond_other_d 0.008 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1875 Nucleic Acid Atoms Solvent Atoms 375 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing