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Structure of R-specific alcohol dehydrogenase (mutant G37D) from Lactobacillus brevis in complex with phenylethanol and NAD
Crystallization Crystal Properties Matthews coefficient Solvent content 2.4 47.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.856 α = 90 b = 79.847 β = 90 c = 112.915 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9155 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 35.6 90750 90750
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.1 35.6 90752 87111 3639 88.93 0.12438 0.12438 0.12382 0.13802 0.1551 RANDOM 10.444
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 0.12 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.325 r_sphericity_free 5.301 r_scangle_it 3.689 r_sphericity_bonded 3.522 r_scbond_it 2.522 r_mcangle_it 1.963 r_angle_refined_deg 1.713 r_mcbond_it 1.375 r_rigid_bond_restr 1.341 r_angle_other_deg 0.869
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.325 r_sphericity_free 5.301 r_scangle_it 3.689 r_sphericity_bonded 3.522 r_scbond_it 2.522 r_mcangle_it 1.963 r_angle_refined_deg 1.713 r_mcbond_it 1.375 r_rigid_bond_restr 1.341 r_angle_other_deg 0.869 r_symmetry_vdw_refined 0.311 r_symmetry_vdw_other 0.295 r_nbd_other 0.256 r_xyhbond_nbd_refined 0.229 r_nbd_refined 0.227 r_symmetry_hbond_refined 0.139 r_chiral_restr 0.101 r_nbtor_other 0.09 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_gen_planes_other 0.007 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1875 Nucleic Acid Atoms Solvent Atoms 387 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing