1PFQ

crystal structure of human apo dipeptidyl peptidase IV / CD26


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.2846.14

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.031α = 90
b = 118.142β = 90
c = 184.583γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray MSINGLE WAVELENGTH

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.92099.70.126122631

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUT1.920115106610198.710.256140.256140.253960.29807RANDOM39.52
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.4-1.041.43
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg21.363
r_dihedral_angle_1_deg8.085
r_mcangle_it1.141
r_scangle_it0.889
r_nbtor_other0.747
r_angle_refined_deg0.649
r_scbond_it0.621
r_mcbond_it0.616
r_angle_other_deg0.527
r_symmetry_vdw_refined0.501
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg21.363
r_dihedral_angle_1_deg8.085
r_mcangle_it1.141
r_scangle_it0.889
r_nbtor_other0.747
r_angle_refined_deg0.649
r_scbond_it0.621
r_mcbond_it0.616
r_angle_other_deg0.527
r_symmetry_vdw_refined0.501
r_symmetry_vdw_other0.489
r_symmetry_hbond_refined0.483
r_nbd_refined0.256
r_nbd_other0.255
r_xyhbond_nbd_refined0.214
r_xyhbond_nbd_other0.184
r_chiral_restr0.043
r_bond_refined_d0.004
r_gen_planes_refined0.002
r_gen_planes_other0.001
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11890
Nucleic Acid Atoms
Solvent Atoms472
Heterogen Atoms56

Software

Software
Software NamePurpose
REFMACrefinement